Dr. LiamJHolt
Photo: 嘿嘿视频 Staff
Resurrecting the ancestors of key enzymes yielded evolutionary insights into their role in human cells and in most cancers, a new study finds.
The study, , revolves around the function of extracellular signal鈥搑egulated kinase (ERK), a protein that determines whether human cells divide and multiply as part of growth.
Led by researchers at NYU School of Medicine, the new study suggests that ERK was easily switched on in ancient one-celled creatures, but was carefully restrained as the first animals evolved 800 million years ago.
Specifically, the research team used computer analyses to determine the DNA sequences, and related protein structures, for ancient ERK relatives. By studying them, the researchers identified two key changes that likely brought ERK under more careful control across evolution.
The team also found that it was 鈥渟urprisingly easy鈥 to reverse those evolutionary changes and return ERK to its primitive, very active, ancestral state. This becomes important, the researchers say, because a similar process occurs as genetic mistakes convert normal cells into cancer. Modern-day ERK is part of 鈥渢he most important signaling pathway in human cancers,鈥 along with the other protein switches that get stuck in the 鈥渙n鈥 position to cause abnormal growth.
鈥淭hat ERK could continue to function while evolving reveals a flexibility that may explain why human cells depend on 500 different kinases that control all aspects of their biology鈥攁nd why faulty kinases are so central to cancer growth,鈥 says senior study author , assistant professor in the at 嘿嘿视频. 鈥淕enetic changes are required for evolution to proceed, but many enzymes stop working when changes occur. ERK continues to signal.鈥
Like all proteins, versions of ERK are assembled from combinations of molecular building blocks called amino acids. The growing variety of amino acid structures across the animal kingdom now cataloged in databases has made possible a new kind of analysis, say the authors. Researchers can make educated guesses about the amino acids occupying each position in the structures of their common ancestors.
Moving forward, the research team plans to resurrect a complete set of inferred ancestors for all proteins in ERK鈥檚 class (kinase) and to screen drug candidates against them, says Dr. Holt. Their plan is based on the hypothesis that some mutations cause cancer because they return kinases to more ancient states that are not properly regulated.
To avert side effects and drug resistance, he says, future drugs might be designed to inhibit ancestor-like, cancer-causing kinase versions without turning off related, normal enzymes.
Along with Dr. Holt, study authors included Dajun Sang and Sudarshan Pinglay from 嘿嘿视频鈥檚 Institute for Systems Genetics. Additional authors included Rafal Wiewiora and John Chodera of the Computational and Systems Biology Program at Memorial Sloan Kettering Cancer Center; Myvizhi Selvan and Zeynep Gumu艧 in the Department of Genetics and Genomic Sciences at Icahn School of Medicine at Mount Sinai; and Hua Jane Lou and Benjamin Turk in the Department of Pharmacology at Yale School of Medicine.
The study was supported by Perlmutter Cancer Center Support grant P30CA016087, Department of Defense Horizon Award W81XWH-17-1-0412, and National Institutes of Health grants R01GM121505 and P30CA008748. Additional funding for the study came from the William Bowes Fellows program, The Vilcek Foundation, the LUNGevity Foundation, and the Icahn Institute for Data Science and Genomic Technology.
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